The clustering appears to have no impact on the variance in convergence.
The following are graphs of the convergences of the two NSGA-II versions on the four problems. The left column shows the median performance, and the right shows the 25th and 75th percentile performances.
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The following are graphs of the running times for solving the previous problems. The clustering version is linearly slower than the baseline version.
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There are some odd blips in some of the running times that seem to be noise. I tested the Tanaka problem with a population size of 2000 for 2000 generations, and I got a very linear result:
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The only thing that can determine whether clustering truly helps NSGA-II perform better is a distribution metric. If clustering helps distribute solutions across the Pareto frontier in fewer generations than the baseline, it may be a viable technique even when it provides no benefit for the convergence.
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