Aptamer Research Presentation

RII 2 Meeting, Feb 18

Erin Thurs 7-26

Worked example of Ordonez distance algorithm

Code snippet - shows code and marks the place where I have verified the algorithm

pseudoCode up to verified line

awk code where I'm hung up

must do: decide on a class the meets requirements, hard as there are very few open

FpFSS slides
Leverages Association Learning (FP Growth) and Clustering (EM) to create a predictive data model in an unclassified database where the number of rows and columns are similar. Model is then applied to a related time series database where cluster concentrations can be predicted for future time values.

Erin's To Dos

Association Learning with FP-Tree/FP-Growth

FPGrowth algorithm introduction slides for learning on frequent patterns.
Another worked example.

Atrazine Target Rough Results

Rough tree on Atrazine Target (final selection round)
Created by using the FP-Tree prefix tree algorithm.  Not complete.

DNA Words, Atrazine Target Trends
Words that either increase or decrease during selection rounds.

Mining DNA Aptamers

http://dl.dropbox.com/u/54855149/Moore030612.pptx